Commit graph

11 commits

Author SHA1 Message Date
Daniel Han
ab0828b976 Studio: fix RAG correctness bugs
Backend:
- Deterministic SQLite connection cleanup. The RAG code used bare
  `with get_connection() as conn:`, which commits but never closes, leaning
  on GC to release handles (the rest of studio_db closes explicitly). Add a
  closing_connection() context manager that commits/rolls back like sqlite3's
  own manager and always closes, and route all 30 RAG call sites through it.
- filter_by_min_score no longer drops BM25-only and figure-ref hits. min_score
  is a cosine floor, so it now gates only hits that carry a dense_score;
  lexical and figure-ref hits (dense_score is None) pass through instead of
  being silently discarded when the floor is raised.
- Fix two tests that could not pass against the production code: the RRF
  fusion test asserted the wrong winner (c edges out b: 0.032266 vs 0.032258),
  and two tool-handler scope tests stubbed retrieve_hybrid without accepting
  the embedder_model kwarg the handler now passes (TypeError was swallowed,
  leaving captured["scope"] unset).

Frontend:
- Removing an in-flight upload chip now routes through the teardown thunk
  already registered for the aggregate-progress toast (abort, unsubscribe,
  release the index slot, delete the backend doc with the correct kb/thread
  scope key it closed over) and clears the toast entry. Deleting directly
  leaked the concurrency slot and hardcoded the thread scope, mis-targeting
  KB-scoped docs. Applied in both the composer hook and the compare-view
  composer; drop the now-vestigial chip-scope-key tracking and unused
  activeThreadId selectors. Add index-progress-store.remove(id).
2026-05-31 09:56:23 +00:00
Daniel Han
d1348cac3f Studio: tighten RAG code comments
Shorten and condense comments across the RAG backend, frontend, and
tests for readability. Comment text only; no code, strings, identifiers,
or logic changed. License headers and lint/type pragmas are preserved.
2026-05-31 08:31:08 +00:00
pre-commit-ci[bot]
d6a7c9f8c7 [pre-commit.ci] auto fixes from pre-commit.com hooks
for more information, see https://pre-commit.ci
2026-05-28 07:50:36 +00:00
Etherll
27b0a50a84 Studio: WIP — RAG preview UI, locator/auth refactor, tests, fixtures (pre-merge snapshot)
Snapshot taken before fast-forwarding feature/rag to origin and merging main.
Bundles in-flight work so the merge has a clean tree:

Frontend
- PDF preview panel (preview-panel, preview-pdf-view, preview-text-view,
  preview-unavailable) with lazy-rendered page thumbnail rail
- Resizable preview slot via useResizablePanelWidth hook (drag handle,
  localStorage persistence, viewport clamping)
- Neutral scrollbar + Source Excerpt card restyle (no brand-coloured rail)
- Preview-store + chat-adapter / rag-api / kb-detail wiring
- Frontend test harness (vitest.config, setupTests, biome update) and the
  paired __tests__ suites for preview, sources, document-row, chat-adapter,
  rag-api, knowledge-bases-tab, search-knowledge-base-tool-ui

Backend
- RAG locator + authorization modules with chunking / retrieval / tool /
  vector_store / studio_db updates
- Paired test_rag_* suites (authorization, locators, locator_backfill,
  locator_migration, preview_routes, preview_target_locators, source_identity)

Other
- tests/fixtures/rag-preview for preview route fixtures (sample.pdf,
  sample.txt, make_fixture_pdf.py)
- .gitignore + package(-lock).json adjustments for the new test runner

Will be squashed/reworked via interactive rebase after main is merged.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
2026-05-28 00:13:43 +03:00
Roland Tannous
6659bdf152 Studio: add figure-reference retrieval source to RAG hybrid search
Dense vectors don't preserve numbers (BGE-small treats 'Figure 1' and
'Figure 10' as nearly identical), so a query like 'what does Figure 1
show' got out-ranked by chunks describing other figures that share more
vocabulary with the question — even after the figure-boundary chunker
ensured Figure 1's chunk started with the literal caption.

Detect 'Figure N' / 'Table N' (numbered, decimal, appendix-style)
references in the query, look up chunks that start with those captions
directly, and feed the result as a third RRF source. RRF gives them
rank-0 in the third ranking and the fused score lifts them above the
dense-vocabulary noise. No-ops when the query has no figure ref.
2026-05-27 16:22:08 +04:00
Roland Tannous
86b52503dd Studio: trim verbose comments/docstrings across RAG code 2026-05-26 13:51:11 +04:00
pre-commit-ci[bot]
b931b0039b [pre-commit.ci] auto fixes from pre-commit.com hooks
for more information, see https://pre-commit.ci
2026-05-25 06:39:01 +00:00
Roland Tannous
0130c1d1ff Studio: query RAG with the same embedder that indexed the scope
The query was always going through the default text embedder
(bge-small, 384-d) regardless of how the scope was ingested. A
multimodal thread indexed by Qwen3-VL (2048-d) crashed at cosine
similarity with 'shapes (104,2048) and (384,) not aligned'.

Resolve the scope's embedder at search time:
  - kb_<id> -> rag_knowledge_bases.embedding_model column
  - thread_<id> -> thread settings (with fallback to defaults +
    RAG_EMBEDDER_MATRIX matrix lookup)

Pass it through retrieve_hybrid/retrieve_dense to embeddings.encode
so the query lands in the same vector space as the docs. Both the
/api/rag/search route and the search_knowledge_base tool use the
same resolver.
2026-05-24 22:06:14 +04:00
Roland Tannous
ccebbed190 Studio: always pre-fetch RAG + min-score threshold + retrieval logging
- chat-adapter pre-fetches retrieval on every turn when RAG is on,
  regardless of provider. Users no longer have to phrase queries as
  'the document I attached' for retrieval to fire. Local tool models
  still get search_knowledge_base registered as a refinement path.
- New per-thread ragMinScore slider (Min relevance, 0..1) gates
  retrieved hits by dense cosine similarity. Hits below the floor
  (and BM25-only hits with no dense signal) are dropped server-side
  so unrelated docs don't get injected when the user's query is
  off-topic from what's indexed.
- Backend logs at search start (scope, top_k, min_score, query
  preview), after retrieval (retrieved vs met_threshold counts),
  and on return (final hit count) for both /api/rag/search and the
  search_knowledge_base tool path.
- System-prompt nudge prepended when pre-fetch returns hits so the
  model knows to cite [1], [2] rather than paraphrase silently.
2026-05-24 18:15:02 +04:00
Roland Tannous
68114fd223 Studio: multimodal RAG mode (Phase 3B-multimodal)
When a KB has mode = 'multimodal', ingestion extracts images alongside
text and embeds both into a shared 512-d vector space via BGE-VL-base.
Image hits become first-class search results — useful for slides,
reports, and diagrams where text-only retrieval loses ~30-50% of the
content.

Backend
- embeddings.py: new encode_images(image_bytes_list) — opens bytes via
  PIL and routes to the SentenceTransformer (BGE-VL accepts PIL images
  in the same encode call as text).
- ingestion.py: _subprocess_worker gains document_id arg and a new
  _stream_image_chunks() helper. For multimodal KBs the standard text
  chunking runs first, then images are saved to
  rag_uploads_root() / 'images' / <document_id> / img-NNNN.<ext> and
  embedded; for each image with an adjacent caption, both an
  'image'-kind chunk (vector = encoded image) and a 'caption'-kind
  chunk (vector = encoded caption text) are streamed back with a
  shared pair_group field.
- ingestion.py parent: _insert_chunks_and_collect_for_bm25 now reads
  kind / image_path / pair_group from the subprocess message,
  populates the new rag_chunks columns, and runs a second pass that
  sets linked_chunk_id for each image ↔ caption pair. BM25 indexes
  text + caption chunks only — image chunks have no tokenisable body.
- retrieval.py: Hit gains a `kind` field plumbed through bm25, dense,
  RRF, and rerank paths.
- reranker.py: image-kind hits skip CrossEncoder rerank (text-only
  model) but are appended back in their original relative position
  rather than dropped.
- routes/rag.py: new GET /api/rag/images/{document_id}/{filename}
  static-file route with realpath containment check. SearchHit gains
  `kind` and `image_url` fields so the chat UI can render image
  thumbnails alongside text hits. KB-doc upload threads kind/mode
  through to ingestion.

Frontend
- rag-api.ts: SearchHit gains optional `kind` and `image_url`.
- kb-create-dialog.tsx: new Mode select (Text / Multimodal) alongside
  the existing Chunking strategy select. The forbidden
  (multimodal + late) combo is enforced in the UI — each side
  disables the conflicting option on the other side with a tooltip
  explaining why. Embedding-model placeholder cycles through the
  three valid defaults (bge-small / nomic / BGE-VL).
- kb-list.tsx + chat-settings-sheet.tsx: 🖼️ MM badge alongside the
   Late one so multimodal KBs are obvious at a glance.

Tests
- test_rag_multimodal.py: parser returns images when want_images=True
  and skips them when False; _validate_mode_combo rejects the
  forbidden (multimodal, late) pair with 400; RAG_EMBEDDER_MATRIX
  contains the three valid combos and excludes the forbidden one;
  image URL construction shape is verified. A server-marked test
  loads BGE-VL-base end-to-end and confirms image + text vectors
  share the same dimension.

Phase 3 of the plan is now feature-complete on the backend; the
remaining items (re-ingest UX for changing strategy on existing KBs)
are tracked under "Backfill UX" and can land separately.
2026-05-24 12:33:08 +04:00
Roland Tannous
92994e8b83 Studio: add RAG with hybrid search, reranker, chat integration
Backend (studio/backend/):
- core/rag/: parsers (PDF/TXT/MD/DOCX/HTML via pypdf/python-docx/bs4),
  recursive token-aware chunker, embeddings singleton via
  FastSentenceTransformer.from_pretrained(for_inference=True), Qdrant
  local vector store, bm25s lexical index, RRF hybrid retrieval,
  spawn-subprocess ingestion job with SSE progress, optional
  CrossEncoder reranker (off-by-default).
- routes/rag.py: KB CRUD, doc upload (KB + per-thread), doc list/delete,
  ingestion SSE, hybrid+rerank search, thread-index list/clear.
- routes/chat_history.py: purge thread RAG artifacts on thread delete
  and clear-all (rag_documents has no FK cascade to chat_threads so
  uploads work on un-persisted threads).
- studio.db gains 4 RAG tables; storage_roots gains rag_*() helpers.
- auth/authentication.py: get_current_subject_sse accepts ?token=... so
  EventSource can stream ingestion progress.

Frontend (studio/frontend/):
- features/rag/: api client, Zustand store, hooks, dropzone, KB list,
  doc rows, ingestion-progress, thread-index list components.
- Settings dialog gains a Knowledge Bases tab (master/detail + thread
  documents list); /knowledge-bases deep-links to it.
- features/chat/: per-thread ragSource/enableRerank/ragTopK state in
  chat-runtime-store; Retrieval section in chat-settings-sheet with KB
  DropdownMenu (active highlight + per-row trash), thread doc list with
  Clear-thread-index button, RAG Top K slider, reranker toggle;
  chat-adapter retrieves before /v1/chat/completions and injects hits
  as a system block; shared-composer + button routes documents into
  pendingDocs (auto-uploads, send blocked while indexing).
2026-05-23 18:46:15 +04:00