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Update vulnerable dependencies to patched versions

Browse source 
Clears the safe set of Dependabot advisories.

Frontend (overrides, all transitive; npm audit now 0):
  mermaid 11.14.0->11.15.0, hono 4.12.17->4.12.18, qs 6.15.1->6.15.2,
  ip-address 10.1.0->10.1.1 (also clears express-rate-limit), and
  brace-expansion 5.0.5->5.0.6 (scoped, the 1.1.14 line is untouched).

Desktop: tauri 2.10.3->2.11.1, pulling the runtime crates it requires
(tao, wry, tauri-runtime, tauri-build, tray-icon).

Backend (test-only): pytest <9.0 -> >=9.0.3,<10, and the pinned
pytest-rerunfailures==15.1 -> >=16.2,<17 (16.2 is the first release with
pytest 9 support). Verified pytest 9.0.3 + rerunfailures 16.3 +
pytest-json-report + pytest-xdist run reruns, fixtures, json reports and
xdist together.

Left out intentionally: transformers (stays 4.x for unsloth compat; patch
is 5.0.0rc3), sqlfluff (major 3->4), glib/rand (stack-coupled transitive).
This commit is contained in:
danielhanchen 2026-06-03 10:36:50 +00:00 • committed by Daniel Han
commit 4f501e53e9
4 changed files with 185 additions and 210 deletions
Download patch file Download diff file Expand all files Collapse all files

4
studio/backend/requirements/extras.txt
View file

@ -11,9 +11,9 @@ hydra-core
hypothesis
kgb
parameterized
pytest<9.0
pytest>=9.0.3,<10
pytest-json-report
pytest-rerunfailures==15.1
pytest-rerunfailures>=16.2,<17
pytest-xdist
# Also needed by sentence_transformers (installed with --no-deps in extras-no-deps.txt)
scikit-learn==1.7.1

182
studio/frontend/package-lock.json generated
View file

@ -856,41 +856,10 @@
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"license": "MIT"
},
"node_modules/@chevrotain/cst-dts-gen": {
"version": "12.0.0",
"resolved": "https://registry.npmjs.org/@chevrotain/cst-dts-gen/-/cst-dts-gen-12.0.0.tgz",
"integrity": "sha512-fSL4KXjTl7cDgf0B5Rip9Q05BOrYvkJV/RrBTE/bKDN096E4hN/ySpcBK5B24T76dlQ2i32Zc3PAE27jFnFrKg==",
"license": "Apache-2.0",
"dependencies": {
"@chevrotain/gast": "12.0.0",
"@chevrotain/types": "12.0.0"
}
},
"node_modules/@chevrotain/gast": {
"version": "12.0.0",
"resolved": "https://registry.npmjs.org/@chevrotain/gast/-/gast-12.0.0.tgz",
"integrity": "sha512-1ne/m3XsIT8aEdrvT33so0GUC+wkctpUPK6zU9IlOyJLUbR0rg4G7ZiApiJbggpgPir9ERy3FRjT6T7lpgetnQ==",
"license": "Apache-2.0",
"dependencies": {
"@chevrotain/types": "12.0.0"
}
},
"node_modules/@chevrotain/regexp-to-ast": {
"version": "12.0.0",
"resolved": "https://registry.npmjs.org/@chevrotain/regexp-to-ast/-/regexp-to-ast-12.0.0.tgz",
"integrity": "sha512-p+EW9MaJwgaHguhoqwOtx/FwuGr+DnNn857sXWOi/mClXIkPGl3rn7hGNWvo31HA3vyeQxjqe+H36yZJwYU8cA==",
"license": "Apache-2.0"
},
"node_modules/@chevrotain/types": {
"version": "12.0.0",
"resolved": "https://registry.npmjs.org/@chevrotain/types/-/types-12.0.0.tgz",
"integrity": "sha512-S+04vjFQKeuYw0/eW3U52LkAHQsB1ASxsPGsLPUyQgrZ2iNNibQrsidruDzjEX2JYfespXMG0eZmXlhA6z7nWA==",
"license": "Apache-2.0"
},
"node_modules/@chevrotain/utils": {
"version": "12.0.0",
"resolved": "https://registry.npmjs.org/@chevrotain/utils/-/utils-12.0.0.tgz",
"integrity": "sha512-lB59uJoaGIfOOL9knQqQRfhl9g7x8/wqFkp13zTdkRu1huG9kg6IJs1O8hqj9rs6h7orGxHJUKb+mX3rPbWGhA==",
"version": "11.1.2",
"resolved": "https://registry.npmjs.org/@chevrotain/types/-/types-11.1.2.tgz",
"integrity": "sha512-U+HFai5+zmJCkK86QsaJtoITlboZHBqrVketcO2ROv865xfCMSFpELQoz1GkX5GzME8pTa+3kbKrZHQtI0gdbw==",
"license": "Apache-2.0"
},
"node_modules/@dagrejs/dagre": {
@ -1598,12 +1567,12 @@
}
},
"node_modules/@mermaid-js/parser": {
"version": "1.1.0",
"resolved": "https://registry.npmjs.org/@mermaid-js/parser/-/parser-1.1.0.tgz",
"integrity": "sha512-gxK9ZX2+Fex5zu8LhRQoMeMPEHbc73UKZ0FQ54YrQtUxE1VVhMwzeNtKRPAu5aXks4FasbMe4xB4bWrmq6Jlxw==",
"version": "1.1.1",
"resolved": "https://registry.npmjs.org/@mermaid-js/parser/-/parser-1.1.1.tgz",
"integrity": "sha512-VuHdsYMK1bT6X2JbcAaWAhugTRvRBRyuZgd+c22swUeI9g/ntaxF7CY7dYarhZovofCbUNO0G7JesfmNtjYOCw==",
"license": "MIT",
"dependencies": {
"langium": "^4.0.0"
"@chevrotain/types": "~11.1.1"
}
},
"node_modules/@modelcontextprotocol/sdk": {
@ -6294,9 +6263,9 @@
}
},
"node_modules/@ts-morph/common/node_modules/brace-expansion": {
"version": "5.0.5",
"resolved": "https://registry.npmjs.org/brace-expansion/-/brace-expansion-5.0.5.tgz",
"integrity": "sha512-VZznLgtwhn+Mact9tfiwx64fA9erHH/MCXEUfB/0bX/6Fz6ny5EGTXYltMocqg4xFAQZtnO3DHWWXi8RiuN7cQ==",
"version": "5.0.6",
"resolved": "https://registry.npmjs.org/brace-expansion/-/brace-expansion-5.0.6.tgz",
"integrity": "sha512-kLpxurY4Z4r9sgMsyG0Z9uzsBlgiU/EFKhj/h91/8yHu0edo7XuixOIH3VcJ8kkxs6/jPzoI6U9Vj3WqbMQ94g==",
"license": "MIT",
"dependencies": {
"balanced-match": "^4.0.2"
@ -6942,9 +6911,9 @@
}
},
"node_modules/@typescript-eslint/typescript-estree/node_modules/brace-expansion": {
"version": "5.0.5",
"resolved": "https://registry.npmjs.org/brace-expansion/-/brace-expansion-5.0.5.tgz",
"integrity": "sha512-VZznLgtwhn+Mact9tfiwx64fA9erHH/MCXEUfB/0bX/6Fz6ny5EGTXYltMocqg4xFAQZtnO3DHWWXi8RiuN7cQ==",
"version": "5.0.6",
"resolved": "https://registry.npmjs.org/brace-expansion/-/brace-expansion-5.0.6.tgz",
"integrity": "sha512-kLpxurY4Z4r9sgMsyG0Z9uzsBlgiU/EFKhj/h91/8yHu0edo7XuixOIH3VcJ8kkxs6/jPzoI6U9Vj3WqbMQ94g==",
"dev": true,
"license": "MIT",
"dependencies": {
@ -7637,34 +7606,6 @@
"url": "https://github.com/sponsors/wooorm"
}
},
"node_modules/chevrotain": {
"version": "12.0.0",
"resolved": "https://registry.npmjs.org/chevrotain/-/chevrotain-12.0.0.tgz",
"integrity": "sha512-csJvb+6kEiQaqo1woTdSAuOWdN0WTLIydkKrBnS+V5gZz0oqBrp4kQ35519QgK6TpBThiG3V1vNSHlIkv4AglQ==",
"license": "Apache-2.0",
"dependencies": {
"@chevrotain/cst-dts-gen": "12.0.0",
"@chevrotain/gast": "12.0.0",
"@chevrotain/regexp-to-ast": "12.0.0",
"@chevrotain/types": "12.0.0",
"@chevrotain/utils": "12.0.0"
},
"engines": {
"node": ">=22.0.0"
}
},
"node_modules/chevrotain-allstar": {
"version": "0.4.3",
"resolved": "https://registry.npmjs.org/chevrotain-allstar/-/chevrotain-allstar-0.4.3.tgz",
"integrity": "sha512-2X4mkroolSMKqW+H22pyPMUVDqYZzPhephTmg/NODKb1IGYPHfxfhcW0EjS7wcPJNbze2i4vBWT7zT5FKF2lrQ==",
"license": "MIT",
"dependencies": {
"lodash-es": "^4.18.1"
},
"peerDependencies": {
"chevrotain": "^12.0.0"
}
},
"node_modules/class-variance-authority": {
"version": "0.7.1",
"resolved": "https://registry.npmjs.org/class-variance-authority/-/class-variance-authority-0.7.1.tgz",
@ -10044,9 +9985,9 @@
}
},
"node_modules/hono": {
"version": "4.12.17",
"resolved": "https://registry.npmjs.org/hono/-/hono-4.12.17.tgz",
"integrity": "sha512-FbJJNb/XgX7YW0hX/V8w5oYLztKEsRLykCMZWt1WdLtsfjzMvmoqWBA4H4t5norinq8/rh20oiZYr+WSl4UzAQ==",
"version": "4.12.18",
"resolved": "https://registry.npmjs.org/hono/-/hono-4.12.18.tgz",
"integrity": "sha512-RWzP96k/yv0PQfyXnWjs6zot20TqfpfsNXhOnev8d1InAxubW93L11/oNUc3tQqn2G0bSdAOBpX+2uDFHV7kdQ==",
"license": "MIT",
"engines": {
"node": ">=16.9.0"
@ -10199,9 +10140,9 @@
}
},
"node_modules/ip-address": {
"version": "10.1.0",
"resolved": "https://registry.npmjs.org/ip-address/-/ip-address-10.1.0.tgz",
"integrity": "sha512-XXADHxXmvT9+CRxhXg56LJovE+bmWnEWB78LB83VZTprKTmaC5QfruXocxzTZ2Kl0DNwKuBdlIhjL8LeY8Sf8Q==",
"version": "10.1.1",
"resolved": "https://registry.npmjs.org/ip-address/-/ip-address-10.1.1.tgz",
"integrity": "sha512-1FMu8/N15Ck1BL551Jf42NYIoin2unWjLQ2Fze/DXryJRl5twqtwNHlO39qERGbIOcKYWHdgRryhOC+NG4eaLw==",
"license": "MIT",
"engines": {
"node": ">= 12"
@ -10627,24 +10568,6 @@
"node": ">=6"
}
},
"node_modules/langium": {
"version": "4.2.3",
"resolved": "https://registry.npmjs.org/langium/-/langium-4.2.3.tgz",
"integrity": "sha512-sOPIi4hISFnY7twwV97ca1TsxpBtXq0URu/LL1AvxwccPG/RIBBlKS7a/f/EL6w8lTNaS0EFs/F+IdSOaqYpng==",
"license": "MIT",
"dependencies": {
"@chevrotain/regexp-to-ast": "~12.0.0",
"chevrotain": "~12.0.0",
"chevrotain-allstar": "~0.4.3",
"vscode-languageserver": "~9.0.1",
"vscode-languageserver-textdocument": "~1.0.11",
"vscode-uri": "~3.1.0"
},
"engines": {
"node": ">=20.10.0",
"npm": ">=10.2.3"
}
},
"node_modules/layout-base": {
"version": "1.0.2",
"resolved": "https://registry.npmjs.org/layout-base/-/layout-base-1.0.2.tgz",
@ -11448,14 +11371,14 @@
}
},
"node_modules/mermaid": {
"version": "11.14.0",
"resolved": "https://registry.npmjs.org/mermaid/-/mermaid-11.14.0.tgz",
"integrity": "sha512-GSGloRsBs+JINmmhl0JDwjpuezCsHB4WGI4NASHxL3fHo3o/BRXTxhDLKnln8/Q0lRFRyDdEjmk1/d5Sn1Xz8g==",
"version": "11.15.0",
"resolved": "https://registry.npmjs.org/mermaid/-/mermaid-11.15.0.tgz",
"integrity": "sha512-pTMbcf3rWdtLiYGpmoTjHEpeY8seiy6sR+9nD7LOs8KfUbHE4lOUAprTRqRAcWSQ6MQpdX+YEsxShtGsINtPtw==",
"license": "MIT",
"dependencies": {
"@braintree/sanitize-url": "^7.1.1",
"@iconify/utils": "^3.0.2",
"@mermaid-js/parser": "^1.1.0",
"@mermaid-js/parser": "^1.1.1",
"@types/d3": "^7.4.3",
"@upsetjs/venn.js": "^2.0.0",
"cytoscape": "^3.33.1",
@ -11466,14 +11389,14 @@
"dagre-d3-es": "7.0.14",
"dayjs": "^1.11.19",
"dompurify": "^3.3.1",
"es-toolkit": "^1.45.1",
"katex": "^0.16.25",
"khroma": "^2.1.0",
"lodash-es": "^4.17.23",
"marked": "^16.3.0",
"roughjs": "^4.6.6",
"stylis": "^4.3.6",
"ts-dedent": "^2.2.0",
"uuid": "^11.1.0"
"uuid": "^11.1.0 || ^12 || ^13 || ^14.0.0"
}
},
"node_modules/micromark": {
@ -12942,9 +12865,9 @@
}
},
"node_modules/qs": {
"version": "6.15.1",
"resolved": "https://registry.npmjs.org/qs/-/qs-6.15.1.tgz",
"integrity": "sha512-6YHEFRL9mfgcAvql/XhwTvf5jKcOiiupt2FiJxHkiX1z4j7WL8J/jRHYLluORvc1XxB5rV20KoeK00gVJamspg==",
"version": "6.15.2",
"resolved": "https://registry.npmjs.org/qs/-/qs-6.15.2.tgz",
"integrity": "sha512-Rzq0KEyX/w/tEybncDgdkZrJgVUsUMk3xjh3t5bv3S1HTAtg+uOYt72+ZfwiQwKdysThkTBdL/rTi6HDmX9Ddw==",
"license": "BSD-3-Clause",
"dependencies": {
"side-channel": "^1.1.0"
@ -15302,55 +15225,6 @@
"node": "^10 || ^12 || >=14"
}
},
"node_modules/vscode-jsonrpc": {
"version": "8.2.0",
"resolved": "https://registry.npmjs.org/vscode-jsonrpc/-/vscode-jsonrpc-8.2.0.tgz",
"integrity": "sha512-C+r0eKJUIfiDIfwJhria30+TYWPtuHJXHtI7J0YlOmKAo7ogxP20T0zxB7HZQIFhIyvoBPwWskjxrvAtfjyZfA==",
"license": "MIT",
"engines": {
"node": ">=14.0.0"
}
},
"node_modules/vscode-languageserver": {
"version": "9.0.1",
"resolved": "https://registry.npmjs.org/vscode-languageserver/-/vscode-languageserver-9.0.1.tgz",
"integrity": "sha512-woByF3PDpkHFUreUa7Hos7+pUWdeWMXRd26+ZX2A8cFx6v/JPTtd4/uN0/jB6XQHYaOlHbio03NTHCqrgG5n7g==",
"license": "MIT",
"dependencies": {
"vscode-languageserver-protocol": "3.17.5"
},
"bin": {
"installServerIntoExtension": "bin/installServerIntoExtension"
}
},
"node_modules/vscode-languageserver-protocol": {
"version": "3.17.5",
"resolved": "https://registry.npmjs.org/vscode-languageserver-protocol/-/vscode-languageserver-protocol-3.17.5.tgz",
"integrity": "sha512-mb1bvRJN8SVznADSGWM9u/b07H7Ecg0I3OgXDuLdn307rl/J3A9YD6/eYOssqhecL27hK1IPZAsaqh00i/Jljg==",
"license": "MIT",
"dependencies": {
"vscode-jsonrpc": "8.2.0",
"vscode-languageserver-types": "3.17.5"
}
},
"node_modules/vscode-languageserver-textdocument": {
"version": "1.0.12",
"resolved": "https://registry.npmjs.org/vscode-languageserver-textdocument/-/vscode-languageserver-textdocument-1.0.12.tgz",
"integrity": "sha512-cxWNPesCnQCcMPeenjKKsOCKQZ/L6Tv19DTRIGuLWe32lyzWhihGVJ/rcckZXJxfdKCFvRLS3fpBIsV/ZGX4zA==",
"license": "MIT"
},
"node_modules/vscode-languageserver-types": {
"version": "3.17.5",
"resolved": "https://registry.npmjs.org/vscode-languageserver-types/-/vscode-languageserver-types-3.17.5.tgz",
"integrity": "sha512-Ld1VelNuX9pdF39h2Hgaeb5hEZM2Z3jUrrMgWQAu82jMtZp7p3vJT3BzToKtZI7NgQssZje5o0zryOrhQvzQAg==",
"license": "MIT"
},
"node_modules/vscode-uri": {
"version": "3.1.0",
"resolved": "https://registry.npmjs.org/vscode-uri/-/vscode-uri-3.1.0.tgz",
"integrity": "sha512-/BpdSx+yCQGnCvecbyXdxHDkuk55/G3xwnC0GqY4gmQ3j+A+g8kzzgB4Nk/SINjqn6+waqw3EgbVF2QKExkRxQ==",
"license": "MIT"
},
"node_modules/web-namespaces": {
"version": "2.0.1",
"resolved": "https://registry.npmjs.org/web-namespaces/-/web-namespaces-2.0.1.tgz",

7
studio/frontend/package.json
View file

@ -82,7 +82,12 @@
"overrides": {
"@tanstack/react-router": "1.169.2",
"@tanstack/router-core": "1.169.2",
"@tanstack/history": "1.161.6"
"@tanstack/history": "1.161.6",
"mermaid": "11.15.0",
"hono": "4.12.18",
"qs": "6.15.2",
"ip-address": "10.1.1",
"brace-expansion@5.0.5": "5.0.6"
},
"devDependencies": {
"@biomejs/biome": "^1.9.4",

202
studio/src-tauri/Cargo.lock generated
View file

@ -703,14 +703,20 @@ dependencies = [
[[package]]
name = "ctor"
version = "0.2.9"
version = "0.8.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "32a2785755761f3ddc1492979ce1e48d2c00d09311c39e4466429188f3dd6501"
checksum = "352d39c2f7bef1d6ad73db6f5160efcaed66d94ef8c6c573a8410c00bf909a98"
dependencies = [
"quote",
"syn 2.0.117",
"ctor-proc-macro",
"dtor",
]
[[package]]
name = "ctor-proc-macro"
version = "0.0.7"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "52560adf09603e58c9a7ee1fe1dcb95a16927b17c127f0ac02d6e768a0e25bc1"
[[package]]
name = "darling"
version = "0.23.0"
@ -745,6 +751,17 @@ dependencies = [
"syn 2.0.117",
]
[[package]]
name = "dbus"
version = "0.9.11"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "b942602992bb7acfd1f51c49811c58a610ef9181b6e66f3e519d79b540a3bf73"
dependencies = [
"libc",
"libdbus-sys",
"windows-sys 0.61.2",
]
[[package]]
name = "deranged"
version = "0.5.8"
@ -923,6 +940,21 @@ dependencies = [
"dtoa",
]
[[package]]
name = "dtor"
version = "0.3.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "f1057d6c64987086ff8ed0fd3fbf377a6b7d205cc7715868cd401705f715cbe4"
dependencies = [
"dtor-proc-macro",
]
[[package]]
name = "dtor-proc-macro"
version = "0.0.6"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "f678cf4a922c215c63e0de95eb1ff08a958a81d47e485cf9da1e27bf6305cfa5"
[[package]]
name = "dunce"
version = "1.0.5"
@ -2246,6 +2278,15 @@ version = "0.2.183"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "b5b646652bf6661599e1da8901b3b9522896f01e736bad5f723fe7a3a27f899d"
[[package]]
name = "libdbus-sys"
version = "0.2.7"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "328c4789d42200f1eeec05bd86c9c13c7f091d2ba9a6ea35acdf51f31bc0f043"
dependencies = [
"pkg-config",
]
[[package]]
name = "libloading"
version = "0.7.4"
@ -2415,9 +2456,9 @@ dependencies = [
[[package]]
name = "muda"
version = "0.17.1"
version = "0.19.2"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "01c1738382f66ed56b3b9c8119e794a2e23148ac8ea214eda86622d4cb9d415a"
checksum = "47a2e3dff89cd322c66647942668faee0a2b1f88ea6cbb4d374b4a8d7e92528c"
dependencies = [
"crossbeam-channel",
"dpi",
@ -2428,10 +2469,10 @@ dependencies = [
"objc2-core-foundation",
"objc2-foundation",
"once_cell",
"png 0.17.16",
"png 0.18.1",
"serde",
"thiserror 2.0.18",
"windows-sys 0.60.2",
"windows-sys 0.61.2",
]
[[package]]
@ -2466,12 +2507,6 @@ dependencies = [
"thiserror 1.0.69",
]
[[package]]
name = "ndk-context"
version = "0.1.1"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "27b02d87554356db9e9a873add8782d4ea6e3e58ea071a9adb9a2e8ddb884a8b"
[[package]]
name = "ndk-sys"
version = "0.6.0+11769913"
@ -2598,6 +2633,27 @@ dependencies = [
"objc2-foundation",
]
[[package]]
name = "objc2-cloud-kit"
version = "0.3.2"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "73ad74d880bb43877038da939b7427bba67e9dd42004a18b809ba7d87cee241c"
dependencies = [
"bitflags 2.11.0",
"objc2",
"objc2-foundation",
]
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