feat(core): port v2 runtime fixes onto dev

Cherry-picks the packages/core changes from the v2 branch onto dev:
- combined ordered stdout/stderr in AppProcess + bash structured output
- edit/apply-patch return FileDiff info with status and line stats
- ignore no-op model switches; record reasoning timestamps
- return unexpected local tool defects to the model and continue
- keep OAuth account metadata out of request bodies
- nest OpenAI reasoning effort/summary options
- load OpenCode provider config asynchronously; batch plugin boot
- export latest public event manifest

Includes the supporting schema reasoning time field and regenerated
client/SDK types.

packages/core/test/tool-apply-patch.test.ts

@@ -149,6 +149,29 @@ describe("ApplyPatchTool", () => {
                     { type: "update", resource: "update.txt" },
                     { type: "delete", resource: "remove.txt" },
                   ],
+                  files: [
+                    {
+                      file: "nested/new.txt",
+                      status: "added",
+                      additions: 1,
+                      deletions: 0,
+                      patch: expect.stringContaining("+created"),
+                    },
+                    {
+                      file: "update.txt",
+                      status: "modified",
+                      additions: 1,
+                      deletions: 1,
+                      patch: expect.stringContaining("-before\n+after"),
+                    },
+                    {
+                      file: "remove.txt",
+                      status: "deleted",
+                      additions: 0,
+                      deletions: 1,
+                      patch: expect.stringContaining("-remove"),
+                    },
+                  ],
                 })
                 expect(assertions).toMatchObject([
                   { sessionID, action: "edit", resources: ["nested/new.txt", "update.txt", "remove.txt"], save: ["*"] },