diff --git a/docs/apps/low-level.mdx b/docs/apps/low-level.mdx
index fc07e5b8d..46de3e03d 100644
--- a/docs/apps/low-level.mdx
+++ b/docs/apps/low-level.mdx
@@ -75,7 +75,9 @@ The `visibility` field controls where a tool appears:
 
 This is useful when you have tools that only make sense as part of the app's interactive flow, not as standalone LLM actions.
 
-Visibility is a declaration, not server-side filtering. Every tool appears in `tools/list` carrying its `visibility` metadata, and the host decides what to show the model — the division the MCP Apps specification defines. Listing them is also what lets a proxy or gateway forward them: an intermediary can only route to a tool it can see.
+Visibility is a declaration, and on `tools/list` the host does the filtering — the division the MCP Apps specification defines. Every tool is advertised carrying its `visibility` metadata, which is also what lets a proxy or gateway forward it: an intermediary can only route to a tool it can see.
+
+That division assumes a host stands between the server and the model. Where one doesn't, FastMCP applies the declaration itself. [Tool search](/servers/transforms/tool-search) and code mode reach the model as ordinary tool output rather than as an advertised listing, and their call-tool proxies execute a name the model supplies — nothing downstream can filter either, so app-only tools are excluded from both. The app's own UI still reaches its backends, because a UI calling by identity is not the model.
 
 ```python
 @mcp.tool(
diff --git a/docs/servers/transforms/tool-search.mdx b/docs/servers/transforms/tool-search.mdx
index 204004f5c..c3f44a3cf 100644
--- a/docs/servers/transforms/tool-search.mdx
+++ b/docs/servers/transforms/tool-search.mdx
@@ -153,6 +153,8 @@ Tools discovered through search can also be called directly via `client.call_too
 
 Search results respect the full authorization pipeline. Tools filtered by middleware, visibility transforms, or component-level auth checks won't appear in search results.
 
+App-only tools are excluded too. A [MCP app](/apps/overview) can declare backend tools that only its UI may call, and normally the host keeps those from the model. A search result is tool output rather than an advertised listing, so no host filtering applies to it — the exclusion happens here instead. The `call_tool` proxy enforces the same boundary, since it executes a name the model supplies.
+
 The search tool queries `list_tools()` through the complete pipeline at search time, so the same filtering that controls what a client sees in the listing also controls what they can discover through search.
 
 ```python
diff --git a/fastmcp_slim/fastmcp/apps/config.py b/fastmcp_slim/fastmcp/apps/config.py
index 3d89aa382..1686d8626 100644
--- a/fastmcp_slim/fastmcp/apps/config.py
+++ b/fastmcp_slim/fastmcp/apps/config.py
@@ -11,6 +11,7 @@ from typing import Any, Literal
 
 from pydantic import BaseModel, Field
 
+from fastmcp.utilities.components import FastMCPComponent
 from fastmcp.utilities.mime import UI_MIME_TYPE as UI_MIME_TYPE
 from fastmcp.utilities.mime import resolve_ui_mime_type as resolve_ui_mime_type
 
@@ -182,3 +183,31 @@ def app_config_to_meta_dict(app: AppConfig | dict[str, Any]) -> dict[str, Any]:
     if isinstance(app, AppConfig):
         return app.model_dump(by_alias=True, exclude_none=True)
     return app
+
+
+def is_model_visible(component: FastMCPComponent) -> bool:
+    """Whether a component may be shown to, or invoked by, the model.
+
+    Visibility is a declaration, and the MCP Apps spec puts the filtering on
+    the host — so ``tools/list`` carries app-only tools and the host keeps
+    them from the model. That division only works where a host stands between
+    the server and the model.
+
+    It does not hold for surfaces a server drives itself. A search result or
+    a code-mode catalog reaches the model as ordinary tool output, and a
+    call-tool proxy invokes on a name the model supplies; nothing downstream
+    can filter either. Those surfaces have to apply the declaration here.
+
+    A component with no ``visibility`` is visible: the field marks the
+    exception, and the spec's default is both audiences.
+    """
+    meta = component.meta
+    if not meta:
+        return True
+    ui_meta = meta.get("ui")
+    if not isinstance(ui_meta, dict):
+        return True
+    visibility = ui_meta.get("visibility")
+    if not isinstance(visibility, list):
+        return True
+    return "model" in visibility
diff --git a/fastmcp_slim/fastmcp/server/transforms/catalog.py b/fastmcp_slim/fastmcp/server/transforms/catalog.py
index 936fcd9b3..e1ea30486 100644
--- a/fastmcp_slim/fastmcp/server/transforms/catalog.py
+++ b/fastmcp_slim/fastmcp/server/transforms/catalog.py
@@ -49,6 +49,7 @@ from collections.abc import Sequence
 from contextvars import ContextVar
 from typing import TYPE_CHECKING
 
+from fastmcp.apps.config import is_model_visible
 from fastmcp.server.transforms import Transform
 from fastmcp.utilities.versions import dedupe_with_versions
 
@@ -177,6 +178,16 @@ class CatalogTransform(Transform):
         of each tool is returned — matching what protocol handlers expose
         on the wire.
 
+        Tools the model may not see are excluded. A catalog is read by the
+        model as tool output rather than advertised as ``tools/list``, so the
+        host filtering the spec relies on never applies to it — this is the
+        only place the declaration can be enforced.
+
+        Visibility is checked after deduplication, on the version a bare name
+        actually reaches. Checking first would let a model-visible older
+        version advertise a name whose highest version is app-only, and the
+        call would run the version nobody was shown.
+
         Args:
             ctx: The current request context.
             run_middleware: Whether to run middleware on the inner call.
@@ -188,7 +199,8 @@ class CatalogTransform(Transform):
             tools = await ctx.fastmcp.list_tools(run_middleware=run_middleware)
         finally:
             self._bypass.reset(token)
-        return dedupe_with_versions(tools, lambda t: t.name)
+        selected = dedupe_with_versions(tools, lambda t: t.name)
+        return [tool for tool in selected if is_model_visible(tool)]
 
     async def get_resource_catalog(
         self, ctx: Context, *, run_middleware: bool = True
diff --git a/fastmcp_slim/fastmcp/server/transforms/search/base.py b/fastmcp_slim/fastmcp/server/transforms/search/base.py
index cfeac6909..cdb47680b 100644
--- a/fastmcp_slim/fastmcp/server/transforms/search/base.py
+++ b/fastmcp_slim/fastmcp/server/transforms/search/base.py
@@ -31,6 +31,7 @@ from abc import abstractmethod
 from collections.abc import Awaitable, Callable, Sequence
 from typing import Annotated, Any
 
+from fastmcp.exceptions import NotFoundError
 from fastmcp.server.context import Context
 from fastmcp.server.transforms import GetToolNext
 from fastmcp.server.transforms.catalog import CatalogTransform
@@ -240,6 +241,13 @@ class BaseSearchTransform(CatalogTransform):
                 raise ValueError(
                     f"'{name}' is a synthetic search tool and cannot be called via the call_tool proxy"
                 )
+            # The name comes from the model, so this proxy is a second way
+            # into the server that no host mediates. It may reach only what
+            # the model was allowed to discover.
+            if not any(
+                tool.name == name for tool in await transform.get_tool_catalog(ctx)
+            ):
+                raise NotFoundError(f"Unknown tool: {name!r}")
             return await ctx.fastmcp.call_tool(name, arguments)
 
         return Tool.from_function(fn=call_tool, name=self._call_tool_name)
diff --git a/tests/server/transforms/test_model_visibility_boundary.py b/tests/server/transforms/test_model_visibility_boundary.py
new file mode 100644
index 000000000..f1d98b67d
--- /dev/null
+++ b/tests/server/transforms/test_model_visibility_boundary.py
@@ -0,0 +1,168 @@
+"""App-only tools must not reach the model through server-driven surfaces.
+
+`tools/list` carries app-only tools on purpose — intermediaries need them to
+forward, and the MCP Apps spec puts visibility filtering on the host. That
+division holds only where a host sits between the server and the model.
+
+A search result, a code-mode catalog, and a call-tool proxy are all driven by
+the server itself: the first two reach the model as ordinary tool output, and
+the third invokes on a name the model supplies. No host mediates any of them,
+so the visibility declaration has to be applied server-side.
+"""
+
+from __future__ import annotations
+
+import json
+
+import pytest
+
+from fastmcp import Client, FastMCP, FastMCPApp
+from fastmcp.exceptions import ToolError
+from fastmcp.experimental.transforms.code_mode import CodeMode
+from fastmcp.server.providers.addressing import hashed_backend_name
+from fastmcp.server.transforms.search import BM25SearchTransform, RegexSearchTransform
+from fastmcp.tools.base import Tool
+
+
+def build_server_without_transform() -> FastMCP:
+    return _build(None)
+
+
+def build_server(transform) -> FastMCP:
+    return _build(transform)
+
+
+def _build(transform) -> FastMCP:
+    app = FastMCPApp("contacts")
+
+    @app.tool()
+    def save_contact(name: str) -> str:
+        """UI-only backend that writes a contact."""
+        return f"saved {name}"
+
+    @app.tool(model=True)
+    def search_contacts(query: str) -> str:
+        """Model-visible backend."""
+        return f"found {query}"
+
+    @app.ui()
+    def contacts_ui() -> str:
+        return "ui"
+
+    server = FastMCP("Platform")
+    server.add_provider(app)
+    if transform is not None:
+        server.add_transform(transform)
+    return server
+
+
+CATALOG_TRANSFORMS = [
+    pytest.param(RegexSearchTransform, id="regex-search"),
+    pytest.param(BM25SearchTransform, id="bm25-search"),
+    pytest.param(CodeMode, id="code-mode"),
+]
+
+
+@pytest.mark.parametrize("transform_cls", CATALOG_TRANSFORMS)
+async def test_app_only_tools_stay_out_of_model_catalogs(transform_cls):
+    """Discovery surfaces hand tool definitions straight to the model."""
+    server = build_server(transform_cls())
+
+    async with Client(server) as client:
+        blob = ""
+        for tool in await client.list_tools():
+            if "search" not in tool.name:
+                continue
+            # Each transform names its search argument differently; the
+            # schema is the authority.
+            (argument,) = (tool.input_schema or {}).get("required", ["query"])
+            result = await client.call_tool(tool.name, {argument: "search_contacts"})
+            blob += json.dumps(result.structured_content or "")
+            blob += "".join(
+                block.text for block in result.content if hasattr(block, "text")
+            )
+
+    assert blob, "no search surface produced output"
+    assert "save_contact" not in blob
+    assert "search_contacts" in blob
+
+
+async def test_app_only_tools_are_listed_for_forwarding():
+    """The wire listing keeps them: a proxy cannot forward what it cannot see.
+
+    Only the model-facing catalog is filtered, so a server without a catalog
+    transform still advertises the tool and its declaration for a host to
+    act on.
+    """
+    plain = build_server_without_transform()
+
+    async with Client(plain) as client:
+        listed = {tool.name: tool for tool in await client.list_tools()}
+
+    assert "save_contact" in listed
+    assert listed["save_contact"].meta is not None
+    assert listed["save_contact"].meta["ui"]["visibility"] == ["app"]
+
+
+async def test_call_tool_proxy_refuses_undiscoverable_tools():
+    """The proxy takes a model-supplied name, so it is a second door in."""
+    server = build_server(RegexSearchTransform())
+
+    async with Client(server) as client:
+        with pytest.raises(ToolError, match="save_contact"):
+            await client.call_tool(
+                "call_tool",
+                {"name": "save_contact", "arguments": {"name": "eve"}},
+            )
+
+        allowed = await client.call_tool(
+            "call_tool",
+            {"name": "search_contacts", "arguments": {"query": "ada"}},
+        )
+        assert allowed.content[0].text == "found ada"  # type: ignore[union-attr]
+
+
+@pytest.mark.parametrize("transform_cls", CATALOG_TRANSFORMS)
+async def test_the_apps_own_ui_still_reaches_its_backend(transform_cls):
+    """The point of the boundary is the audience, not the tool: a UI calling
+    by identity is not the model, and must still work.
+    """
+    server = build_server(transform_cls())
+
+    result = await server.call_tool(
+        hashed_backend_name("contacts", "save_contact"), {"name": "ada"}
+    )
+    assert result.content[0].text == "saved ada"  # type: ignore[union-attr]  # ty:ignore[unresolved-attribute]
+
+
+async def test_visibility_is_checked_on_the_version_a_name_reaches():
+    """A bare name selects the highest version, so that is the one whose
+    declaration governs. Checking before deduplication would advertise a
+    model-visible older version whose name runs an app-only newer one.
+    """
+
+    def versioned(version: str, visibility: list[str], marker: str) -> Tool:
+        def same() -> str:
+            return f"ran {marker}"
+
+        return Tool.from_function(
+            same, name="same", version=version, meta={"ui": {"visibility": visibility}}
+        )
+
+    app = FastMCPApp("contacts")
+    app.add_tool(versioned("1.0.0", ["app", "model"], "v1"))
+    app.add_tool(versioned("2.0.0", ["app"], "v2"))
+
+    server = FastMCP("Platform")
+    server.add_provider(app)
+    server.add_transform(RegexSearchTransform())
+
+    async with Client(server) as client:
+        found = await client.call_tool("search_tools", {"pattern": "same"})
+        blob = json.dumps(found.structured_content or "") + "".join(
+            block.text for block in found.content if hasattr(block, "text")
+        )
+        assert "same" not in blob
+
+        with pytest.raises(ToolError, match="same"):
+            await client.call_tool("call_tool", {"name": "same", "arguments": {}})